Protein Structure Prediction

LAW

Predicting residue-specific qualities of individual protein models using graph neural networks

build Access Software
Protein Structure Prediction

MASS2

Predicting residue-specific qualities of individual protein models using residual neural networks

build Access Software
3D genome

scHiCEmbed

scHiCEmbed: bin-specific embeddings of single-cell Hi-C data using graph auto-encoders

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Protein function prediction

PANDA2

PANDA2: protein function prediction using graph neural networks

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3D genome

LJ3D

Inferring single-Cell 3D chromosomal structures based on the Lennard-Jones potential

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3D genome

normGAM

normGAM: an R package to remove systematic biases in genome architecture mapping data

build Access Software
3D genome

HiCNN2

HiCNN2: Enhancing the resolution of Hi-C data using an ensemble of convolutional neural networks

build Access Software
3D genome

3D-XCI

Inferring the three-dimensional structures of the X-chromosome during X-inactivation

build Access Software
3D genome

HiCNN

A very deep convolutional neural network to better enhance the resolution of Hi-C data

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3D genome

TADKB

Family classification and a knowledge base of topologically associating domains

build Access Software
3D genome

SCL

A lattice-based approach to infer three-dimensional chromosome structures from single-cell Hi-C data

build Access Software
3D genome

HiCNet

Reconstruct high-resolution chromosome 3D structures based on Hi-C complex networks

build Access Software
3D genome

3DChrom

Reconstruct chromosome 3D structures using multidimensional scaling.

build Access Software
3D genome

scHiCNorm

Eliminate systematic biases in single-cell Hi-C data

build Access Software
Protein structure prediction

MASS

Predict the global qualities of individual protein models using random forests and novel statistical potentials

build Access Software
Protein structure prediction

RFcon

Predict protein residue-residue contacts using random forests and deep networks

build Access Software
Protein structure prediction

SOV_refine

A further refined definition of segment overlap score

build Access Software
Protein function prediction

GOGO

An improved algorithm to measure the semantic similarity between gene ontology terms

build Access Software
Protein function prediction

PANDA

Protein function prediction using domain architecture and affinity propagation

build Access Software
Others

DeepMethyl

Predict DNA methylation state of CpG dinucleotide using genome topological features and deep networks

build Access Software
3D genome

scHiCEmbed

scHiCEmbed: bin-specific embeddings of single-cell Hi-C data using graph auto-encoders

build Access Software
3D genome

LJ3D

Inferring single-Cell 3D chromosomal structures based on the Lennard-Jones potential

build Access Software
3D genome

normGAM

normGAM: an R package to remove systematic biases in genome architecture mapping data

build Access Software
3D genome

HiCNN2

HiCNN2: Enhancing the resolution of Hi-C data using an ensemble of convolutional neural networks

build Access Software
3D genome

3D-XCI

Inferring the three-dimensional structures of the X-chromosome during X-inactivation

build Access Software
3D genome

HiCNN

A very deep convolutional neural net-work to better enhance the resolution of Hi-C data

build Access Software
3D genome

TADKB

Family classification and a knowledge base of topologically associating domains

build Access Software
3D genome

SCL

A lattice-based approach to infer three-dimensional chromosome structures from single-cell Hi-C data

build Access Software
3D genome

HiCNet

Reconstruct high-resolution chromosome 3D structures based on Hi-C complex networks

build Access Software
3D genome

3DChrom

Reconstruct chromosome 3D structures using multidimensional scaling.

build Access Software
3D genome

scHiCNorm

Eliminate systematic biases in single-cell Hi-C data

build Access Software
Protein Structure Prediction

LAW

Predicting residue-specific qualities of individual protein models using graph neural networks

build Access Software
Protein Structure Prediction

MASS2

Predicting residue-specific qualities of individual protein models using residual neural networks

build Access Software
Protein structure prediction

MASS

Predict the global qualities of individual protein models using random forests and novel statistical potentials

build Access Software
Protein structure prediction

RFcon

Predict protein residue-residue contacts using random forests and deep networks

build Access Software
Protein structure prediction

SOV_refine

A further refined definition of segment overlap score

build Access Software
Protein function prediction

PANDA2

PANDA2: protein function prediction using graph neural networks

build Access Software
Protein function prediction

GOGO

An improved algorithm to measure the semantic similarity between gene ontology terms

build Access Software
Protein function prediction

PANDA

Protein function prediction using domain architecture and affinity propagation

build Access Software
Others

DeepMethyl

Predict DNA methylation state of CpG dinucleotide using genome topological features and deep networks

build Access Software

SPONSORS

The following sponsors have provided funding to support our research: